ECOD
F-group (family)

4952.1.1.1 Lyase_1

Open in classification tree →Pfam PF00206 →

Ligands and drugs

936
Member domains
151
with ligand contacts (≤ 4 Å)
16.1% of members
103
with DrugDomain annotations
11.0% of members
77
with a DrugBank compound
8.2% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 4952.1.1.1 belongs to X-group 4952 L-aspartase N-terminal domain-like, which binds 7.4 ligand superclasses per 20 proteins, narrower than 54% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB01677FUMFumaric acid12
DB02267AS1Argininosuccinate10
DB00131AMPAdenosine phosphate4
DB00128ASPAspartic acid3
DB00125ARGArginine2
DB02749PMAPyromellitic Acid2
DB03452SIF3-Trimethylsilylsuccinic Acid2
DB044182SAAdenylosuccinic acid2
DB14756SRTmeso-Tartaric acid2
DB02379BGCBeta-D-Glucose1
DB03292APO3-Phosphono-D-alanine1
DB03814—2-(N-morpholino)ethanesulfonic acid1
DB09459TLAL-tartaric acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
CLCHLORIDE ION35
AS1ARGININOSUCCINATE22
FUMFUMARIC ACID22
LMR(2S)-2-hydroxybutanedioic acid12
ARGARGININE10
NAmetalSODIUM ION5
AMPADENOSINE MONOPHOSPHATE4
COmetalCOBALT (II) ION4
CAmetalCALCIUM ION3
2SA2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID2
ASPASPARTIC ACID2
MGmetalMAGNESIUM ION2
PMAPYROMELLITIC ACID2
SIF3-TRIMETHYLSILYLSUCCINIC ACID2
SRTS,R MESO-TARTARIC ACID2
TRAACONITATE ION2
APOD-2-AMINO-3-PHOSPHONO-PROPIONIC ACID1
TLAL(+)-TARTARIC ACID1