4963 N-terminal additional helical subdomain in reovirus polymerase lambda3
Ligands and drugs
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.
The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.
| Superclass | Proteins | Expected | 0.25×observed / expected4× | Ratio | Significance |
|---|---|---|---|---|---|
| Nucleosides, nucleotides, and analogues | 5 | 1.6 | 3.06× | not tested | |
| Organoheterocyclic compounds | 1 | 0.9 | 1.10× | not tested | |
| Homogeneous non-metal compounds | 1 | 1.3 | 0.79× | not tested | |
| Homogeneous metal compounds | 1 | 2.9 | 0.34× | not tested |
Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04137 | GTP | Guanosine-5'-Triphosphate | 4 |
| DB00171 | ATP | ATP | 1 |
| DB01649 | GTA | 7-methyl-GpppA | 1 |
| DB03493 | MG7 | 7-Methylguanosine | 1 |
| DB03593 | G7M | 7-methyl-5'-guanylic acid | 1 |
| DB03958 | GTG | 7-methyl-guanosine-5'-triphosphate-5'-guanosine | 1 |
| DB04005 | UTP | Uridine 5'-triphosphate | 1 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 4 |
| CH1 | 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE | 3 |
| A1BVR | 5-(5-bromo-1-methyl-2-oxo-1,2-dihydrospiro[indole-3,4'-piperidin]-1'-yl)-3-chloropyridine-2-carbonitrile | 1 |
| A2M | 2'-O-methyladenosine 5'-(dihydrogen phosphate) | 1 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 1 |
| DPO | DIPHOSPHATE | 1 |
| G7M | N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE | 1 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 1 |
| GTA | P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE | 1 |
| GTG | 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE | 1 |
| MG7 | 7-METHYLGUANOSINE | 1 |
| NAmetal | SODIUM ION | 1 |
| SVR | 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID | 1 |