ECOD
F-group (family)

4964.1.1.1 DNA_pol_A

Open in classification tree →Pfam PF00476 →

Ligands and drugs

446
Member domains
308
with ligand contacts (≤ 4 Å)
69.1% of members
248
with DrugDomain annotations
55.6% of members
153
with a DrugBank compound
34.3% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 4964.1.1.1 belongs to X-group 4964 helical bundle in Bacillus stearothermophilus-like DNA polymerase I, which has 16 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB02181DGT2'-Deoxyguanosine-5'-Triphosphate33
DB03258DCP2'-Deoxycytidine 5'-triphosphate16
DB02452TTPThymidine 5'-triphosphate14
DB02189DDS2',3'-Dideoxyadenosine triphosphate12
DB02431CTPCytidine-5'-Triphosphate12
DB03222DTPdATP4
DB03152BGLB-2-Octylglucoside2
DB07435BAP1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE1

Most frequently bound compounds

PDB ligandNameDomains in contact
DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE39
DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE31
MGmetalMAGNESIUM ION31
DPODIPHOSPHATE24
DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE22
DCP2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE16
TTPTHYMIDINE-5'-TRIPHOSPHATE15
CTPCYTIDINE-5'-TRIPHOSPHATE12
DDS2',3'-dideoxyadenosine triphosphate12
D3T2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE10
XG42'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine9
DTP2'-DEOXYADENOSINE 5'-TRIPHOSPHATE8
CLCHLORIDE ION7
DAD2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE7
K8I(2~{S},3~{R})-1-[3-cyano-6-methyl-4-(trifluoromethyl)pyridin-2-yl]-~{N}-methyl-~{N}-(3-methylphenyl)-3-oxidanyl-pyrrolidine-2-carboxamide4
2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE3
CAmetalCALCIUM ION3
AF2-AMINOFLUORENE2
BGL2-O-octyl-beta-D-glucopyranose2
MNmetalMANGANESE (II) ION2