F-group (family)
4964.1.1.2 RNA_pol
Ligands and drugs
115
Member domains
26
with ligand contacts (≤ 4 Å)
22.6% of members
25
with DrugDomain annotations
21.7% of members
20
with a DrugBank compound
17.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4964.1.1.2 belongs to X-group 4964 helical bundle in Bacillus stearothermophilus-like DNA polymerase I, which has 16 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 5 |
| DB00171 | ATP | ATP | 4 |
| DB03896 | 3PO | Triphosphoric acid | 4 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 6 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 5 |
| 3PO | TRIPHOSPHATE | 4 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 4 |
| S96 | (7P)-3-{5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-7-(thiophen-2-yl)-3H-imidazo[4,5-b]pyridine | 2 |
| GH3 | 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE | 1 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 1 |
| HGmetal | MERCURY (II) ION | 1 |
| POP | PYROPHOSPHATE 2- | 1 |
| S8L | 1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-1H-pyrrole-2-carbaldehyde | 1 |