F-group (family)
4970.1.1.1 DNA_pol_B
Ligands and drugs
136
Member domains
64
with ligand contacts (≤ 4 Å)
47.1% of members
50
with DrugDomain annotations
36.8% of members
36
with a DrugBank compound
26.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4970.1.1.1 belongs to X-group 4970 "fingers" domain in bacteriophage RB69-like DNA polymerase I, which binds 8.3 ligand superclasses per 20 proteins, broader than 64% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 8 |
| DB03222 | DTP | dATP | 6 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 5 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 3 |
| DB04160 | PPV | Pyrophosphoric acid | 3 |
| DB04447 | DTT | 1,4-Dithiothreitol | 3 |
| DB17742 | 2ZE | Aphidicolin | 2 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 10 |
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 8 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 6 |
| D3T | 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE | 4 |
| DCP | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE | 4 |
| 9O7 | [(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate | 3 |
| CAmetal | CALCIUM ION | 3 |
| DTT | 2,3-DIHYDROXY-1,4-DITHIOBUTANE | 3 |
| PPV | PYROPHOSPHATE | 3 |
| 2ZE | (3R,4R,4aR,6aS,8R,9R,11aS,11bS)-4,9-bis(hydroxymethyl)-4,11b-dimethyltetradecahydro-8,11a-methanocyclohepta[a]naphthalene-3,9-diol | 2 |
| A1AC6 | 2-(4-bromophenyl)-N-(3-methoxy-4-{[(4S)-2-oxo-1,3-oxazolidin-4-yl]methyl}phenyl)acetamide | 2 |
| IOD | IODIDE ION | 2 |
| YE4 | N-(4-chlorobenzyl)-1-methyl-6-(morpholinomethyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide | 2 |
| 5CY | 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-yl}-3,3-dimethyl-3H-indolium | 1 |
| B0U | 3-[2-[2-(2-azanylethoxy)ethoxy]ethoxy]propanoic acid | 1 |
| BR | BROMIDE ION | 1 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 1 |
| DZ4 | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine | 1 |
| HHZ | [[(2~{R},3~{S},5~{R})-5-[4-azanyl-5-[3-[2-(2-hydroxyethyloxy)ethanoylamino]prop-1-ynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate | 1 |
| MGmetal | MAGNESIUM ION | 1 |