F-group (family)
4970.1.1.2 DNA_pol_A
Ligands and drugs
428
Member domains
234
with ligand contacts (≤ 4 Å)
54.7% of members
226
with DrugDomain annotations
52.8% of members
143
with a DrugBank compound
33.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4970.1.1.2 belongs to X-group 4970 "fingers" domain in bacteriophage RB69-like DNA polymerase I, which binds 8.3 ligand superclasses per 20 proteins, broader than 64% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 33 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 16 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 13 |
| DB02189 | DDS | 2',3'-Dideoxyadenosine triphosphate | 12 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 12 |
| DB03222 | DTP | dATP | 4 |
| DB07435 | BAP | 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 40 |
| DG3 | 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE | 27 |
| DCT | 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | 19 |
| DCP | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE | 16 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 12 |
| MGmetal | MAGNESIUM ION | 10 |
| D3T | 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE | 9 |
| XG4 | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine | 9 |
| DDS | 2',3'-dideoxyadenosine triphosphate | 8 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 8 |
| ZNmetal | ZINC ION | 6 |
| CL | CHLORIDE ION | 5 |
| DAD | 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE | 5 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 4 |
| 15P | POLYETHYLENE GLYCOL (N=34) | 2 |
| CAmetal | CALCIUM ION | 2 |
| MNmetal | MANGANESE (II) ION | 2 |
| NAmetal | SODIUM ION | 2 |
| 0KL | 5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate) | 1 |
| 0L3 | 7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine | 1 |