ECOD
F-group (family)

5.1.2.8 Glyco_hydro_43

Open in classification tree →Pfam PF04616 →

Ligands and drugs

394
Member domains
244
with ligand contacts (≤ 4 Å)
61.9% of members
210
with DrugDomain annotations
53.3% of members
146
with a DrugBank compound
37.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 5.1.2.8 belongs to X-group 5 beta-propeller-like, which binds 7.8 ligand superclasses per 20 proteins, broader than 52% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00141NAGN-Acetylglucosamine8
DB02676B3P2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol4
DB03389XYSalpha-D-Xylopyranose4
DB03411EDG2-Hydroxymethyl-Pyrrolidine-3,4-Diol2
DB04237TAMTris(Hydroxyethyl)Aminomethane2
DB05018DGJMigalastat2
DB00139SINSuccinic acid1
DB01862IPTIsopropyl beta-D-thiogalactopyranoside1
DB03142AHRAlpha-L-Arabinose1
DB03570144Tris-Hydroxymethyl-Methyl-Ammonium1

Most frequently bound compounds

PDB ligandNameDomains in contact
CAmetalCALCIUM ION97
NAmetalSODIUM ION33
MGmetalMAGNESIUM ION18
CLCHLORIDE ION17
FUBbeta-L-arabinofuranose8
XLSD-xylose8
XYPbeta-D-xylopyranose7
B3P2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL6
GALbeta-D-galactopyranose6
ARAalpha-L-arabinopyranose5
AAL3,6-anhydro-alpha-L-galactopyranose4
NAG2-acetamido-2-deoxy-beta-D-glucopyranose4
XYSalpha-D-xylopyranose4
AHRalpha-L-arabinofuranose3
GLAalpha-D-galactopyranose3
47NNEOAGAROBIOSE2
6LW(Z)-L-Arabinonhydroximo-1,4-lactone2
DGJ(2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol2
EDG1,4-DIDEOXY-1,4-IMINO-L-ARABINITOL2
IODIODIDE ION2