F-group (family)
5033.1.1.1 PsbM
Ligands and drugs
329
Member domains
317
with ligand contacts (≤ 4 Å)
96.4% of members
217
with DrugDomain annotations
66.0% of members
187
with a DrugBank compound
56.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5033.1.1.1 belongs to X-group 5033 Photosystem II reaction center protein M, PsbM, which has 13 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02043 | LHG | 1,2-Dipalmitoyl-Phosphatidyl-Glycerole | 177 |
| DB03193 | STE | Stearic acid | 50 |
| DB02133 | CLA | Chlorophyll A | 13 |
| DB03426 | DGD | Digalactosyl Diacyl Glycerol (Dgdg) | 13 |
| DB04735 | MGE | Monogalactosyldiacylglycerol | 8 |
| DB06755 | BCR | Beta carotene | 4 |
| DB04464 | FME | N-Formylmethionine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CLA | CHLOROPHYLL A | 309 |
| LMG | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | 299 |
| BCR | BETA-CAROTENE | 293 |
| LHG | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | 274 |
| SQD | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | 253 |
| UNL | Unknown ligand | 97 |
| STE | STEARIC ACID | 54 |
| DGD | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | 15 |
| 8CT | (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene | 10 |
| MGE | (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE | 10 |
| 3PH | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE | 9 |
| CL7 | CHLOROPHYLL D | 6 |
| LFA | EICOSANE | 3 |
| PLM | PALMITIC ACID | 3 |
| LNL | ALPHA-LINOLENIC ACID | 2 |
| WVN | 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene | 2 |
| FME | N-FORMYLMETHIONINE | 1 |