H-group (homology)
5084.5 Porins
Ligands and drugs
2,022
Member domains
696
with ligand contacts (≤ 4 Å)
34.4% of members
590
with DrugDomain annotations
29.2% of members
395
with a DrugBank compound
19.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5084.5 belongs to X-group 5084 Outer membrane meander beta-barrels, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02767 | FTT | (R)-3-hydroxytetradecanoic acid | 18 |
| DB08249 | N8E | 3,6,9,12,15-PENTAOXATRICOSAN-1-OL | 18 |
| DB08231 | MYR | Myristic acid | 12 |
| DB02415 | OES | N-Octyl-2-Hydroxyethyl Sulfoxide | 9 |
| DB00141 | NAG | N-Acetylglucosamine | 6 |
| DB03017 | DAO | Lauric acid | 6 |
| DB03548 | KDO | 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | 6 |
| DB03556 | PE5 | 2-(2-{2-[2-(2-{2-[2-(2-Ethoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol, Polyethyleneglycol Peg400 | 6 |
| DB00115 | CNC | Cyanocobalamin | 5 |
| DB18267 | HEM | Ferroheme | 5 |
| DB00171 | ATP | ATP | 4 |
| DB00254 | DXT | Doxycycline | 4 |
| DB02130 | VNL | Vanillic acid | 4 |
| DB03574 | FCI | Ferricrocin-iron | 4 |
| DB08217 | MTN | S-[(1-Hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate | 4 |
| DB00142 | GLU | Glutamic acid | 3 |
| DB00415 | AIC | Ampicillin | 3 |
| DB01375 | — | — | 3 |
| DB02907 | EAP | 2-Amino-Vinyl-Phosphate | 3 |
| DB04039 | LIM | 3-Oxo-Pentadecanoic Acid | 3 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAmetal | SODIUM ION | 83 |
| MGmetal | MAGNESIUM ION | 76 |
| CAmetal | CALCIUM ION | 65 |
| PC1 | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 28 |
| OCT | N-OCTANE | 20 |
| FEmetal | FE (III) ION | 18 |
| FTT | 3-HYDROXY-TETRADECANOIC ACID | 18 |
| N8E | 3,6,9,12,15-PENTAOXATRICOSAN-1-OL | 18 |
| CL | CHLORIDE ION | 16 |
| CUmetal | COPPER (II) ION | 16 |
| Kmetal | POTASSIUM ION | 15 |
| MC3 | 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE | 14 |
| MYR | MYRISTIC ACID | 12 |
| ZNmetal | ZINC ION | 12 |
| HEX | HEXANE | 11 |
| LImetal | LITHIUM ION | 11 |
| AGmetal | SILVER ION | 10 |
| BR | BROMIDE ION | 10 |
| PVE | (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM | 10 |
| 78M | (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE | 9 |