ECOD
F-group (family)

6.1.1.4 Ricin_B_lectin

Open in classification tree →Pfam PF00652 →

Ligands and drugs

616
Member domains
244
with ligand contacts (≤ 4 Å)
39.6% of members
211
with DrugDomain annotations
34.3% of members
130
with a DrugBank compound
21.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 6.1.1.4 belongs to X-group 6 beta-Trefoil, which binds 7.5 ligand superclasses per 20 proteins, narrower than 52% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00141NAGN-Acetylglucosamine49
DB03567A2Galpha-N-Acetyl-D-galactosamine11
DB02100AMGMethyl alpha-galactoside5
DB020421PG2-(2-{2-[2-(2-Methoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol4
DB00145GLYGlycine2
DB02379BGCBeta-D-Glucose2
DB11337ZEAZeatin2
DB15584LU2Luteolin2
DB00133SERSerine1
DB02196UD2Uridine-Diphosphate-N-Acetylgalactosamine1
DB03389XYSalpha-D-Xylopyranose1
DB03485FCAalpha-D-Fucopyranose1

Most frequently bound compounds

PDB ligandNameDomains in contact
NAG2-acetamido-2-deoxy-beta-D-glucopyranose40
CAmetalCALCIUM ION27
MGmetalMAGNESIUM ION27
NGA2-acetamido-2-deoxy-beta-D-galactopyranose21
A2G2-acetamido-2-deoxy-alpha-D-galactopyranose19
GALbeta-D-galactopyranose18
CLCHLORIDE ION16
XYPbeta-D-xylopyranose11
AMGmethyl alpha-D-galactopyranoside9
AZIAZIDE ION8
BBK2-acetamido-2-deoxy-5-thio-alpha-D-galactopyranose8
ZNmetalZINC ION6
MNmetalMANGANESE (II) ION5
1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL3
GLAalpha-D-galactopyranose3
NAmetalSODIUM ION3
ARAalpha-L-arabinopyranose2
BGCbeta-D-glucopyranose2
CDmetalCADMIUM ION2
GLYGLYCINE2