X-group (possible homology)

7513 CofD-like

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Ligands and drugs

153

Member domains

with ligand contacts (≤ 4 Å)

15.7% of members

with DrugDomain annotations

15.7% of members

with a DrugBank compound

12.4% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

Proteins with classified ligands

Superclasses bound (of 23)

—

Superclasses per 20 proteins

fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

Superclass	Proteins	Expected	Ratio	Significance
Organoheterocyclic compounds	2	0.6	3.29×	not tested
Nucleosides, nucleotides, and analogues	3	1.1	2.75×	not tested
Homogeneous non-metal compounds	1	0.9	1.18×	not tested
Homogeneous metal compounds	1	1.9	0.52×	not tested

enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB04315	GDP	Guanosine-5'-Diphosphate	8
DB14128	NAD	Nadide	4

Most frequently bound compounds

PDB ligand	Name	Domains in contact
FO1	1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol	10
CAmetal	CALCIUM ION	9
GDP	GUANOSINE-5'-DIPHOSPHATE	8
NAD	NICOTINAMIDE-ADENINE-DINUCLEOTIDE	4
CL	CHLORIDE ION	1
QMD	2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[2,4,8-tris(oxidanylidene)-1,9-dihydropyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxyprop-2-enoic acid	1