ECOD
F-group (family)

7523.1.1.26 SBP_bac_6

Open in classification tree →Pfam PF13343 →

Ligands and drugs

191
Member domains
127
with ligand contacts (≤ 4 Å)
66.5% of members
121
with DrugDomain annotations
63.4% of members
69
with a DrugBank compound
36.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 7523.1.1.26 belongs to X-group 7523 Periplasmic binding protein-like II, which binds 8.6 ligand superclasses per 20 proteins, broader than 69% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB03566SPDSpermidine7
DB01917PUTPutrescine6
DB15872GPEL-alpha-Glycerophosphorylethanolamine4
DB00127SPMSpermine2
DB01786DALD-Alanine2
DB02007G6Palpha-D-glucose 6-phosphate2
DB02517DGLD-Glutamic Acid2
DB02900M6Palpha-D-mannose 6-phosphate2
DB03854N2PCadaverine2
DB08838AG2Agmatine2
DB00114PLPPyridoxal phosphate1
DB00974EDTEdetic acid1
DB04237TAMTris(Hydroxyethyl)Aminomethane1

Most frequently bound compounds

PDB ligandNameDomains in contact
FEmetalFE (III) ION34
CUmetalCOPPER (II) ION9
ZRCOXO ZIRCONIUM(IV) CLUSTER9
CLCHLORIDE ION8
SPDSPERMIDINE8
JFN(2R)-1-methoxypropan-2-amine6
ONT(2~{S})-1-(2-methoxyethoxy)propan-2-amine6
PUT1,4-DIAMINOBUTANE6
HF5HF OXO CLUSTER HF55
CN1OXO-IRON CLUSTER 24
CNBOXO-IRON CLUSTER 14
F6P6-O-phosphono-beta-D-fructofuranose4
GPEL-ALPHA-GLYCEROPHOSPHORYLETHANOLAMINE4
AG2AGMATINE3
CAmetalCALCIUM ION3
G6P6-O-phosphono-alpha-D-glucopyranose3
PHFHF-OXO-PHOSPHATE CLUSTER PHF3
DALD-ALANINE2
DGLD-GLUTAMIC ACID2
GAmetalGALLIUM (III) ION2