F-group (family)
7523.1.1.28 SBP_bac_8
Ligands and drugs
406
Member domains
257
with ligand contacts (≤ 4 Å)
63.3% of members
239
with DrugDomain annotations
58.9% of members
166
with a DrugBank compound
40.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 7523.1.1.28 belongs to X-group 7523 Periplasmic binding protein-like II, which binds 8.6 ligand superclasses per 20 proteins, broader than 69% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03566 | SPD | Spermidine | 60 |
| DB09157 | CO2 | Carbon dioxide | 32 |
| DB04053 | PO2 | Hypophosphite | 8 |
| DB02774 | PDO | 1,3-Propanediol | 6 |
| DB04349 | PGO | (S)-propane-1,2-diol | 4 |
| DB16426 | SO2 | Sulfur dioxide | 3 |
| DB01917 | PUT | Putrescine | 2 |
| DB02159 | PGR | (R)-Propylene glycol | 2 |
| DB02530 | ABU | gamma-Aminobutyric acid | 2 |
| DB02676 | B3P | 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol | 2 |
| DB01694 | TAR | D-tartaric acid | 1 |
| DB02515 | G3P | sn-glycerol 3-phosphate | 1 |
| DB03680 | TTN | Tartronate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| FGO | [(1S,3R,3aR,6aS)-3-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-5,5-bis(oxidanyl)-1,3,3a,4,6,6a-hexahydrocyclopenta[c]furan-1-yl]methyl [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate | 68 |
| SPD | SPERMIDINE | 60 |
| CL | CHLORIDE ION | 52 |
| CO2 | CARBON DIOXIDE | 39 |
| G9Z | agropinic acid | 16 |
| CAmetal | CALCIUM ION | 12 |
| NAmetal | SODIUM ION | 9 |
| PO2 | HYPOPHOSPHITE | 9 |
| 3IE | (2~{S})-1-methoxypropan-2-amine | 6 |
| JFN | (2R)-1-methoxypropan-2-amine | 5 |
| ONT | (2~{S})-1-(2-methoxyethoxy)propan-2-amine | 5 |
| PDO | 1,3-PROPANDIOL | 5 |
| ABU | GAMMA-AMINO-BUTANOIC ACID | 4 |
| FEmetal | FE (III) ION | 4 |
| N72 | (2~{R})-2-[[(3~{R},4~{R},5~{S})-3,4,5,6-tetrakis(oxidanyl)-2-oxidanylidene-hexyl]amino]pentanedioic acid | 4 |
| N7T | (2~{S})-2-[[(3~{S},4~{R},5~{R})-3,4,5,6-tetrakis(oxidanyl)-2-oxidanylidene-hexyl]amino]pentanedioic acid | 4 |
| NSD | N-(3-aminopropyl)propane-1,3-diamine | 4 |
| PGO | S-1,2-PROPANEDIOL | 4 |
| SO3 | SULFITE ION | 4 |
| Kmetal | POTASSIUM ION | 3 |