F-group (family)
7577.1.1.4 Pyridoxal_deC
Ligands and drugs
662
Member domains
240
with ligand contacts (≤ 4 Å)
36.3% of members
223
with DrugDomain annotations
33.7% of members
201
with a DrugBank compound
30.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 7577.1.1.4 belongs to X-group 7577 PLP-dependent transferases, which binds 7.7 ligand superclasses per 20 proteins, broader than 51% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00114 | PLP | Pyridoxal phosphate | 114 |
| DB02142 | PMP | Pyridoxamine-5'-Phosphate | 20 |
| DB02530 | ABU | gamma-Aminobutyric acid | 11 |
| DB03553 | GUA | Glutaric Acid | 8 |
| DB00190 | 142 | Carbidopa | 6 |
| DB00150 | TRP | Tryptophan | 4 |
| DB00988 | LDP | Dopamine | 3 |
| DB00117 | HIS | Histidine | 2 |
| DB00120 | PHE | Phenylalanine | 2 |
| DB00135 | TYR | Tyrosine | 2 |
| DB00139 | SIN | Succinic acid | 2 |
| DB00142 | — | Glutamic acid | 2 |
| DB08653 | TSS | Tryptamine | 2 |
| DB08839 | SRO | Serotonin | 2 |
| DB00151 | — | Cysteine | 1 |
| DB00968 | — | — | 1 |
| DB12783 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| PLP | PYRIDOXAL-5'-PHOSPHATE | 125 |
| PMP | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE | 20 |
| CL | CHLORIDE ION | 14 |
| PLR | (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE | 14 |
| 142 | CARBIDOPA | 12 |
| ABU | GAMMA-AMINO-BUTANOIC ACID | 10 |
| GUA | GLUTARIC ACID | 8 |
| BR | BROMIDE ION | 6 |
| IOD | IODIDE ION | 6 |
| PVH | HISTIDINE-METHYL-ESTER | 6 |
| XE | XENON | 6 |
| 2SU | alpha-(fluoromethyl)-D-tryptophan | 4 |
| 3SO | {5-hydroxy-4-[(1E)-4-(1H-indol-3-yl)-3-oxobut-1-en-1-yl]-6-methylpyridin-3-yl}methyl dihydrogen phosphate | 4 |
| EXT | {5-hydroxy-6-methyl-4-[(E)-{[2-(phosphonooxy)ethyl]imino}methyl]pyridin-3-yl}methyl dihydrogen phosphate | 4 |
| NAmetal | SODIUM ION | 4 |
| TRP | TRYPTOPHAN | 4 |
| 0PR | N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-tyrosine | 3 |
| CAmetal | CALCIUM ION | 3 |
| GKU | 4-[(2R)-2-(methylamino)propyl]phenol | 3 |
| LDP | L-DOPAMINE | 3 |