ECOD
F-group (family)

7577.1.1.8 Beta_elim_lyase

Open in classification tree →Pfam PF01212 →

Ligands and drugs

332
Member domains
194
with ligand contacts (≤ 4 Å)
58.4% of members
158
with DrugDomain annotations
47.6% of members
110
with a DrugBank compound
33.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 7577.1.1.8 belongs to X-group 7577 PLP-dependent transferases, which binds 7.7 ligand superclasses per 20 proteins, broader than 51% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00114PLPPyridoxal phosphate33
DB02824PLGN-Pyridoxyl-Glycine-5-Monophosphate20
DB00133SERSerine6
DB03576TLPN-Pyridoxyl-Threonine-5-Monophosphate4
DB00145GLYGlycine3
DB02688DHA2,3-Didehydroalanine2
DB03345BMEMercaptoethanol2
DB03897HPPPhloretic acid2
DB04436YOF3-Fluoro-L-tyrosine2
DB04467PP3N-(5'-phosphopyridoxyl)-L-alanine2

Most frequently bound compounds

PDB ligandNameDomains in contact
KmetalPOTASSIUM ION89
CLCHLORIDE ION29
PLPPYRIDOXAL-5'-PHOSPHATE29
PLGN-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]24
CAmetalCALCIUM ION20
0JO2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid18
NAmetalSODIUM ION14
CQGpyridin-4-ol12
BZIBENZIMIDAZOLE8
P61(2E)-3-(3-fluoro-4-hydroxyphenyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}propanoic acid8
PLR(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE8
F0G(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine6
MGmetalMAGNESIUM ION6
PLI(2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}PROPANOIC ACID6
SERSERINE6
YAE(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteine6
YAR(2E)-4-(ethylsulfanyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}butanoic acid6
9TD1-carboxy-1-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]azaniumyl}-2-[(3R)-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-ide4
A1ABZ(2E)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}-3-(1H-pyrrolo[2,3-b]pyridin-3-yl)propanoic acid4
A1ACN(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-3-(1H-pyrrolo[2,3-b]pyridin-3-yl)-L-alanine4