ECOD
F-group (family)

862.1.1.5 LigD_Prim-Pol

Open in classification tree →Pfam PF21686 →

Ligands and drugs

52
Member domains
18
with ligand contacts (≤ 4 Å)
34.6% of members
18
with DrugDomain annotations
34.6% of members
14
with a DrugBank compound
26.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 862.1.1.5 belongs to X-group 862 Prim-pol domain, which has 14 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00171ATPATP2
DB02181DGT2'-Deoxyguanosine-5'-Triphosphate2
DB03222DTPdATP2
DB04005UTPUridine 5'-triphosphate2
DB04137GTPGuanosine-5'-Triphosphate1
DB04160PPVPyrophosphoric acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
MNmetalMANGANESE (II) ION13
2KH5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine2
ATPADENOSINE-5'-TRIPHOSPHATE2
DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE2
DTP2'-DEOXYADENOSINE 5'-TRIPHOSPHATE2
UTPURIDINE 5'-TRIPHOSPHATE2
GTPGUANOSINE-5'-TRIPHOSPHATE1
MGmetalMAGNESIUM ION1
NAmetalSODIUM ION1
PPVPYROPHOSPHATE1
U3H3'-DEOXY-URIDINE 5'-TRIPHOSPHATE1