ECODEvolutionary Classification of Protein Domains

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PDB 3JBD

ELECTRON MICROSCOPY5 chains5 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Capsid protein VP1view chain

1 domain

e3jbd11(1:20-302)

Chain 2Capsid protein VP2view chain

1 domain

e3jbd21(2:6-272)

Chain 3Capsid protein VP3view chain

1 domain

e3jbd31(3:1-235)

Chain 4Capsid protein VP4view chain

1 domain

e3jbd41(4:1-69)

Chain 7nanobody VHH PVSP6Aview chain

1 domain

e3jbd71(7:1-120)

All Domains (5)

#	Chain	Domain ID	Range	Family	Classification
1	1	e3jbd11	1:20-302	Rhv	10 → 10.2 → 10.2.1
2	2	e3jbd21	2:6-272	Rhv	10 → 10.2 → 10.2.1
3	3	e3jbd31	3:1-235	Rhv	10 → 10.2 → 10.2.1
4	4	e3jbd41	4:1-69	Pico_P1A	10 → 10.2 → 10.2.1
5	7	e3jbd71	7:1-120	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors