ECODEvolutionary Classification of Protein Domains

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PDB 3PHD

X-RAY DIFFRACTION3.00 Å8 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AHistone deacetylase 6view chain

1 domain

e3phdA1(A:1-102)

Chain BHistone deacetylase 6view chain

1 domain

e3phdB1(B:1-100)

Chain CHistone deacetylase 6view chain

1 domain

e3phdC2(C:3-87)

Chain DHistone deacetylase 6view chain

1 domain

e3phdD2(D:4-87)

Chain EPolyubiquitinview chain

1 domain

e3phdE1(E:1-73)

Chain FPolyubiquitinview chain

1 domain

e3phdF1(F:1-73)

Chain GPolyubiquitinview chain

1 domain

e3phdG1(G:5-76)

Chain HPolyubiquitinview chain

1 domain

e3phdH1(H:5-76)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e3phdA1	A:1-102	zf-UBP	376 → 376.1 → 376.1.1
2	B	e3phdB1	B:1-100	zf-UBP	376 → 376.1 → 376.1.1
3	C	e3phdC2	C:3-87	zf-UBP	376 → 376.1 → 376.1.1
4	D	e3phdD2	D:4-87	zf-UBP	376 → 376.1 → 376.1.1
5	E	e3phdE1	E:1-73	ubiquitin	221 → 221.1 → 221.1.1
6	F	e3phdF1	F:1-73	ubiquitin	221 → 221.1 → 221.1.1
7	G	e3phdG1	G:5-76	ubiquitin	221 → 221.1 → 221.1.1
8	H	e3phdH1	H:5-76	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors