ECODEvolutionary Classification of Protein Domains

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PDB 6Z5S

ELECTRON MICROSCOPY32 chains32 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Light-harvesting complex 1 alpha chainview chain

1 domain

e6z5s11(1:1-46)

Chain 2Light-harvesting complex 1 beta chainview chain

1 domain

e6z5s21(2:6-52)

Chain 3Light-harvesting complex 1 alpha chainview chain

1 domain

e6z5s31(3:1-46)

Chain 4Light-harvesting complex 1 beta chainview chain

1 domain

e6z5s41(4:7-52)

Chain 5Light-harvesting complex 1 alpha chainview chain

1 domain

e6z5s51(5:1-46)

Chain 6Light-harvesting complex 1 beta chainview chain

1 domain

e6z5s61(6:6-47)

Chain ALight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sA1(A:2-41)

Chain BLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sB1(B:6-52)

Chain CLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sC1(C:1-46)

Chain DLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sD1(D:5-52)

Chain ELight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sE1(E:1-46)

Chain FLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sF1(F:5-52)

Chain GLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sG1(G:1-46)

Chain HH subunit of photosynthetic reaction center complexview chain

2 domains

e6z5sH1(H:1-32)e6z5sH2(H:33-251)

Chain ILight-harvesting complex 1 beta chainview chain

1 domain

e6z5sI1(I:6-52)

Chain JLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sJ1(J:1-45)

Chain KLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sK1(K:6-52)

Chain LReaction center protein L chainview chain

1 domain

e6z5sL1(L:2-277)

Chain MReaction center protein M chainview chain

1 domain

e6z5sM1(M:4-302)

Chain NLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sN1(N:1-46)

Chain OLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sO1(O:5-52)

Chain PLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sP1(P:1-46)

Chain QLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sQ1(Q:5-52)

Chain RLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sR1(R:1-46)

Chain SLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sS1(S:5-52)

Chain TLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sT1(T:1-46)

Chain ULight-harvesting complex 1 beta chainview chain

1 domain

e6z5sU1(U:6-52)

Chain VLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sV1(V:1-46)

Chain XLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sX1(X:6-52)

Chain YLight-harvesting complex 1 alpha chainview chain

1 domain

e6z5sY1(Y:1-46)

Chain ZLight-harvesting complex 1 beta chainview chain

1 domain

e6z5sZ1(Z:6-52)

All Domains (32)

#	Chain	Domain ID	Range	Family	Classification
1	1	e6z5s11	1:1-46	LHC	5074 → 5074.1 → 5074.1.1
2	2	e6z5s21	2:6-52	LHC	5074 → 5074.1 → 5074.1.1
3	3	e6z5s31	3:1-46	LHC	5074 → 5074.1 → 5074.1.1
4	4	e6z5s41	4:7-52	LHC	5074 → 5074.1 → 5074.1.1
5	5	e6z5s51	5:1-46	LHC	5074 → 5074.1 → 5074.1.1
6	6	e6z5s61	6:6-47	LHC	5074 → 5074.1 → 5074.1.1
7	A	e6z5sA1	A:2-41	LHC	5074 → 5074.1 → 5074.1.1
8	B	e6z5sB1	B:6-52	LHC	5074 → 5074.1 → 5074.1.1
9	C	e6z5sC1	C:1-46	LHC	5074 → 5074.1 → 5074.1.1
10	D	e6z5sD1	D:5-52	LHC	5074 → 5074.1 → 5074.1.1
11	E	e6z5sE1	E:1-46	LHC	5074 → 5074.1 → 5074.1.1
12	F	e6z5sF1	F:5-52	LHC	5074 → 5074.1 → 5074.1.1
13	G	e6z5sG1	G:1-46	LHC	5074 → 5074.1 → 5074.1.1
14	H	e6z5sH1	H:1-32	PRCH	5002 → 5002.1 → 5002.1.1
15	H	e6z5sH2	H:33-251	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
16	I	e6z5sI1	I:6-52	LHC	5074 → 5074.1 → 5074.1.1
17	J	e6z5sJ1	J:1-45	LHC	5074 → 5074.1 → 5074.1.1
18	K	e6z5sK1	K:6-52	LHC	5074 → 5074.1 → 5074.1.1
19	L	e6z5sL1	L:2-277	Photo_RC	5037 → 5037.1 → 5037.1.1
20	M	e6z5sM1	M:4-302	Photo_RC	5037 → 5037.1 → 5037.1.1
21	N	e6z5sN1	N:1-46	LHC	5074 → 5074.1 → 5074.1.1
22	O	e6z5sO1	O:5-52	LHC	5074 → 5074.1 → 5074.1.1
23	P	e6z5sP1	P:1-46	LHC	5074 → 5074.1 → 5074.1.1
24	Q	e6z5sQ1	Q:5-52	LHC	5074 → 5074.1 → 5074.1.1
25	R	e6z5sR1	R:1-46	LHC	5074 → 5074.1 → 5074.1.1
26	S	e6z5sS1	S:5-52	LHC	5074 → 5074.1 → 5074.1.1
27	T	e6z5sT1	T:1-46	LHC	5074 → 5074.1 → 5074.1.1
28	U	e6z5sU1	U:6-52	LHC	5074 → 5074.1 → 5074.1.1
29	V	e6z5sV1	V:1-46	LHC	5074 → 5074.1 → 5074.1.1
30	X	e6z5sX1	X:6-52	LHC	5074 → 5074.1 → 5074.1.1
31	Y	e6z5sY1	Y:1-46	LHC	5074 → 5074.1 → 5074.1.1
32	Z	e6z5sZ1	Z:6-52	LHC	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors