ECODEvolutionary Classification of Protein Domains

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PDB 7VB9

ELECTRON MICROSCOPY51 chains53 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0Light-harvesting protein B-875 beta chainview chain

1 domain

e7vb901(0:6-49)

Chain 4Light-harvesting protein B-875 beta chainview chain

1 domain

e7vb941(4:13-48)

Chain 5Light-harvesting protein B-875 alpha chainview chain

1 domain

e7vb951(5:13-54)

Chain 6Light-harvesting protein B-875 alpha chainview chain

1 domain

e7vb961(6:1-46)

Chain 7Light-harvesting protein B-875 alpha chainview chain

1 domain

e7vb971(7:1-46)

Chain 8Light-harvesting protein B-875 beta chainview chain

1 domain

e7vb981(8:6-49)

Chain 9Light-harvesting protein B-875 alpha chainview chain

1 domain

e7vb991(9:1-54)

Chain aLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9a1(a:1-54)

Chain ALight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9A1(A:1-54)

Chain aaLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9aa1(aa:6-49)

Chain abLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9ab1(ab:6-49)

Chain bLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9b1(b:6-49)

Chain BLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9B1(B:6-49)

Chain cIntrinsic membrane protein PufXview chain

1 domain

e7vb9c1(c:2-69)

Chain CIntrinsic membrane protein PufXview chain

1 domain

e7vb9C1(C:6-69)

Chain dLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9d1(d:1-54)

Chain DLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9D1(D:1-54)

Chain eLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9e1(e:7-49)

Chain ELight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9E1(E:7-49)

Chain fLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9f1(f:1-54)

Chain FLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9F1(F:1-54)

Chain gLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9g1(g:6-49)

Chain GLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9G1(G:6-49)

Chain hReaction center protein H chainview chain

2 domains

e7vb9h1(h:1-35)e7vb9h2(h:36-260)

Chain HReaction center protein H chainview chain

2 domains

e7vb9H1(H:36-260)e7vb9H2(H:1-35)

Chain iLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9i1(i:1-54)

Chain ILight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9I1(I:1-54)

Chain jLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9j1(j:7-49)

Chain JLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9J1(J:7-49)

Chain kLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9k1(k:1-54)

Chain KLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9K1(K:11-54)

Chain lReaction center protein L chainview chain

1 domain

e7vb9l1(l:1-281)

Chain LReaction center protein L chainview chain

1 domain

e7vb9L1(L:1-268)

Chain mReaction center protein M chainview chain

1 domain

e7vb9m1(m:2-306)

Chain MReaction center protein M chainview chain

1 domain

e7vb9M1(M:2-306)

Chain nLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9n1(n:12-49)

Chain NLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9N1(N:9-49)

Chain oLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9o1(o:1-54)

Chain OLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9O1(O:12-54)

Chain pLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9p1(p:11-49)

Chain qLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9q1(q:1-54)

Chain QLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9Q1(Q:1-54)

Chain rLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9r1(r:7-49)

Chain sLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9s1(s:1-54)

Chain tLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9t1(t:8-49)

Chain uLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9u1(u:1-54)

Chain vLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9v1(v:13-49)

Chain wLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9w1(w:12-54)

Chain xLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9x1(x:8-49)

Chain yLight-harvesting protein B-875 alpha chainview chain

1 domain

e7vb9y1(y:13-54)

Chain zLight-harvesting protein B-875 beta chainview chain

1 domain

e7vb9z1(z:13-49)

All Domains (53)

#	Chain	Domain ID	Range	Family	Classification
1	0	e7vb901	0:6-49	LHC	5074 → 5074.1 → 5074.1.1
2	4	e7vb941	4:13-48	LHC	5074 → 5074.1 → 5074.1.1
3	5	e7vb951	5:13-54	LHC	5074 → 5074.1 → 5074.1.1
4	6	e7vb961	6:1-46	LHC	5074 → 5074.1 → 5074.1.1
5	7	e7vb971	7:1-46	LHC	5074 → 5074.1 → 5074.1.1
6	8	e7vb981	8:6-49	LHC	5074 → 5074.1 → 5074.1.1
7	9	e7vb991	9:1-54	LHC	5074 → 5074.1 → 5074.1.1
8	a	e7vb9a1	a:1-54	LHC	5074 → 5074.1 → 5074.1.1
9	A	e7vb9A1	A:1-54	LHC	5074 → 5074.1 → 5074.1.1
10	aa	e7vb9aa1	aa:6-49	LHC	5074 → 5074.1 → 5074.1.1
11	ab	e7vb9ab1	ab:6-49	LHC	5074 → 5074.1 → 5074.1.1
12	b	e7vb9b1	b:6-49	LHC	5074 → 5074.1 → 5074.1.1
13	B	e7vb9B1	B:6-49	LHC	5074 → 5074.1 → 5074.1.1
14	c	e7vb9c1	c:2-69	RhodobacterPufX	6014 → 6014.1 → 6014.1.1
15	C	e7vb9C1	C:6-69	RhodobacterPufX	6014 → 6014.1 → 6014.1.1
16	d	e7vb9d1	d:1-54	LHC	5074 → 5074.1 → 5074.1.1
17	D	e7vb9D1	D:1-54	LHC	5074 → 5074.1 → 5074.1.1
18	e	e7vb9e1	e:7-49	LHC	5074 → 5074.1 → 5074.1.1
19	E	e7vb9E1	E:7-49	LHC	5074 → 5074.1 → 5074.1.1
20	f	e7vb9f1	f:1-54	LHC	5074 → 5074.1 → 5074.1.1
21	F	e7vb9F1	F:1-54	LHC	5074 → 5074.1 → 5074.1.1
22	g	e7vb9g1	g:6-49	LHC	5074 → 5074.1 → 5074.1.1
23	G	e7vb9G1	G:6-49	LHC	5074 → 5074.1 → 5074.1.1
24	h	e7vb9h1	h:1-35	PRCH	5002 → 5002.1 → 5002.1.1
25	h	e7vb9h2	h:36-260	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
26	H	e7vb9H1	H:36-260	Photosynthetic reaction centre, H-chain N-terminal region / PRC-barrel domain	4 → 4.6 → 4.6.1
27	H	e7vb9H2	H:1-35	PRCH	5002 → 5002.1 → 5002.1.1
28	i	e7vb9i1	i:1-54	LHC	5074 → 5074.1 → 5074.1.1
29	I	e7vb9I1	I:1-54	LHC	5074 → 5074.1 → 5074.1.1
30	j	e7vb9j1	j:7-49	LHC	5074 → 5074.1 → 5074.1.1
31	J	e7vb9J1	J:7-49	LHC	5074 → 5074.1 → 5074.1.1
32	k	e7vb9k1	k:1-54	LHC	5074 → 5074.1 → 5074.1.1
33	K	e7vb9K1	K:11-54	LHC	5074 → 5074.1 → 5074.1.1
34	l	e7vb9l1	l:1-281	Photo_RC	5037 → 5037.1 → 5037.1.1
35	L	e7vb9L1	L:1-268	Photo_RC	5037 → 5037.1 → 5037.1.1
36	m	e7vb9m1	m:2-306	Photo_RC	5037 → 5037.1 → 5037.1.1
37	M	e7vb9M1	M:2-306	Photo_RC	5037 → 5037.1 → 5037.1.1
38	n	e7vb9n1	n:12-49	LHC	5074 → 5074.1 → 5074.1.1
39	N	e7vb9N1	N:9-49	LHC	5074 → 5074.1 → 5074.1.1
40	o	e7vb9o1	o:1-54	LHC	5074 → 5074.1 → 5074.1.1
41	O	e7vb9O1	O:12-54	LHC	5074 → 5074.1 → 5074.1.1
42	p	e7vb9p1	p:11-49	LHC	5074 → 5074.1 → 5074.1.1
43	q	e7vb9q1	q:1-54	LHC	5074 → 5074.1 → 5074.1.1
44	Q	e7vb9Q1	Q:1-54	LHC	5074 → 5074.1 → 5074.1.1
45	r	e7vb9r1	r:7-49	LHC	5074 → 5074.1 → 5074.1.1
46	s	e7vb9s1	s:1-54	LHC	5074 → 5074.1 → 5074.1.1
47	t	e7vb9t1	t:8-49	LHC	5074 → 5074.1 → 5074.1.1
48	u	e7vb9u1	u:1-54	LHC	5074 → 5074.1 → 5074.1.1
49	v	e7vb9v1	v:13-49	LHC	5074 → 5074.1 → 5074.1.1
50	w	e7vb9w1	w:12-54	LHC	5074 → 5074.1 → 5074.1.1
51	x	e7vb9x1	x:8-49	LHC	5074 → 5074.1 → 5074.1.1
52	y	e7vb9y1	y:13-54	LHC	5074 → 5074.1 → 5074.1.1
53	z	e7vb9z1	z:13-49	LHC	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors