ECODEvolutionary Classification of Protein Domains

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PDB 8C29

ELECTRON MICROSCOPY46 chains46 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e8c29a1(a:11-334)

Chain APhotosystem II protein D1view chain

1 domain

e8c29A1(A:11-334)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e8c29b1(b:2-328,b:445-486)e8c29b2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e8c29B1(B:2-328,B:445-486)e8c29B2(B:329-444)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e8c29c1(c:24-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e8c29C1(C:24-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e8c29d1(d:13-353)

Chain DPhotosystem II D2 proteinview chain

1 domain

e8c29D1(D:13-353)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e8c29e1(e:19-83)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e8c29E1(E:19-83)

Chain fCytochrome b559 subunit betaview chain

1 domain

e8c29f1(f:10-39)

Chain FCytochrome b559 subunit betaview chain

1 domain

e8c29F1(F:10-39)

Chain gChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29g1(g:57-274)

Chain GChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29G1(G:57-274)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e8c29h1(h:14-75)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e8c29H1(H:14-75)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e8c29i1(i:1-36)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e8c29I1(I:1-36)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e8c29k1(k:23-59)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e8c29K1(K:23-59)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e8c29l1(l:3-38)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e8c29L1(L:3-38)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e8c29m1(m:2-32)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e8c29M1(M:2-32)

Chain nChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29n1(n:57-274)

Chain NChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29N1(N:57-274)

Chain oOxygen-evolving enhancer protein 1, chloroplasticview chain

1 domain

e8c29o1(o:96-244,o:288-341)

Chain OOxygen-evolving enhancer protein 1, chloroplasticview chain

1 domain

e8c29O1(O:96-244,O:288-341)

Chain rChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29r1(r:77-298)

Chain RChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29R1(R:77-298)

Chain sChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29s1(s:81-295)

Chain SChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29S1(S:81-295)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e8c29t1(t:1-31)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e8c29T1(T:1-31)

Chain vPhotosystem II reaction center protein Ycf12view chain

1 domain

e8c29v1(v:3-33)

Chain VPhotosystem II reaction center protein Ycf12view chain

1 domain

e8c29V1(V:3-33)

Chain wPSII 6.1 kDa proteinview chain

1 domain

e8c29w1(w:93-146)

Chain WPSII 6.1 kDa proteinview chain

1 domain

e8c29W1(W:93-146)

Chain xPhotosystem II PsbXview chain

1 domain

e8c29x1(x:91-124)

Chain XPhotosystem II PsbXview chain

1 domain

e8c29X1(X:91-124)

Chain yChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29y1(y:57-274)

Chain YChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e8c29Y1(Y:57-274)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e8c29z1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e8c29Z1(Z:1-62)

All Domains (46)

#	Chain	Domain ID	Range	Family	Classification
1	a	e8c29a1	a:11-334	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e8c29A1	A:11-334	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e8c29b1	b:2-328,b:445-486	PSII	5075 → 5075.1 → 5075.1.1
4	b	e8c29b2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e8c29B1	B:2-328,B:445-486	PSII	5075 → 5075.1 → 5075.1.1
6	B	e8c29B2	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
7	c	e8c29c1	c:24-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e8c29C1	C:24-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e8c29d1	d:13-353	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e8c29D1	D:13-353	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e8c29e1	e:19-83	Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e8c29E1	E:19-83	Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e8c29f1	f:10-39	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e8c29F1	F:10-39	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	g	e8c29g1	g:57-274	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
16	G	e8c29G1	G:57-274	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
17	h	e8c29h1	h:14-75	PsbH	5032 → 5032.1 → 5032.1.1
18	H	e8c29H1	H:14-75	PsbH	5032 → 5032.1 → 5032.1.1
19	i	e8c29i1	i:1-36	PsbI	5035 → 5035.1 → 5035.1.1
20	I	e8c29I1	I:1-36	PsbI	5035 → 5035.1 → 5035.1.1
21	k	e8c29k1	k:23-59	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e8c29K1	K:23-59	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e8c29l1	l:3-38	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e8c29L1	L:3-38	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e8c29m1	m:2-32	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e8c29M1	M:2-32	PsbM	5033 → 5033.1 → 5033.1.1
27	n	e8c29n1	n:57-274	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
28	N	e8c29N1	N:57-274	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
29	o	e8c29o1	o:96-244,o:288-341	MSP	5084 → 5084.1 → 5084.1.1
30	O	e8c29O1	O:96-244,O:288-341	MSP	5084 → 5084.1 → 5084.1.1
31	r	e8c29r1	r:77-298	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
32	R	e8c29R1	R:77-298	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
33	s	e8c29s1	s:81-295	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
34	S	e8c29S1	S:81-295	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
35	t	e8c29t1	t:1-31	PsbT	3390 → 3390.1 → 3390.1.1
36	T	e8c29T1	T:1-31	PsbT	3390 → 3390.1 → 3390.1.1
37	v	e8c29v1	v:3-33	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
38	V	e8c29V1	V:3-33	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
39	w	e8c29w1	w:93-146	PsbW	1084 → 1084.1 → 1084.1.1
40	W	e8c29W1	W:93-146	PsbW	1084 → 1084.1 → 1084.1.1
41	x	e8c29x1	x:91-124	PsbX	3493 → 3493.1 → 3493.1.1
42	X	e8c29X1	X:91-124	PsbX	3493 → 3493.1 → 3493.1.1
43	y	e8c29y1	y:57-274	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
44	Y	e8c29Y1	Y:57-274	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
45	z	e8c29z1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
46	Z	e8c29Z1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors