ECODEvolutionary Classification of Protein Domains

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PDB 8CMO

ELECTRON MICROSCOPY21 chains23 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Light-harvesting protein of photosystem I Lhca1view chain

1 domain

e8cmo101(1:85-224)

Chain 2Light-harvesting protein of photosystem I Lhca2 partialview chain

1 domain

e8cmo201(2:161-183)

Chain 3Light-harvesting protein of photosystem I Lhca3view chain

1 domain

e8cmo301(3:56-231)

Chain 4Light-harvesting protein of photosystem I Lhca4view chain

1 domain

e8cmo401(4:135-262)

Chain 5Light-harvesting protein of photosystem I Lhca5view chain

1 domain

e8cmo501(5:78-256)

Chain 6Light-harvesting protein of photosystem I Lhca6view chain

1 domain

e8cmo601(6:116-254)

Chain 7Light-harvesting protein of photosystem I Lhca7view chain

1 domain

e8cmo701(7:25-244)

Chain 8Light-harvesting protein of photosystem I Lhca8view chain

1 domain

e8cmo801(8:27-240)

Chain 9Light-harvesting protein of photosystem I Lhca9view chain

1 domain

e8cmo901(9:57-204)

Chain APhotosystem I P700 chlorophyll a apoprotein A1 PsaAview chain

2 domains

e8cmoA01(A:11-435)e8cmoA02(A:436-750)

Chain BPhotosystem I P700 chlorophyll a apoprotein A2 PsaBview chain

2 domains

e8cmoB01(B:2-417)e8cmoB02(B:418-728)

Chain CPhotosystem I subunit VII PsaCview chain

1 domain

e8cmoC01(C:2-81)

Chain DPhotosystem I reaction center subunit II PsaDview chain

1 domain

e8cmoD01(D:103-194)

Chain EPhotosystem I reaction center subunit IV PsaEview chain

1 domain

e8cmoE01(E:35-95)

Chain FPhotosystem I reaction center subunit III PsaFview chain

1 domain

e8cmoF01(F:63-227)

Chain GPhotosystem I reaction center subunit V PsaGview chain

1 domain

e8cmoG01(G:31-62)

Chain IPhotosystem I reaction center subunit VIII PsaIview chain

1 domain

e8cmoI01(I:63-103)

Chain JPhotosystem I subunit IX PsaJview chain

1 domain

e8cmoJ01(J:1-40)

Chain KPhotosystem I reaction center subunit X psaKview chain

1 domain

e8cmoK01(K:69-113)

Chain LPhotosystem I reaction centre subunit XI PsaLview chain

1 domain

e8cmoL01(L:54-189)

Chain ZLight-harvesting protein of photosystem I Lhca1view chain

1 domain

e8cmoZ1(Z:55-194)

All Domains (23)

#	Chain	Domain ID	Range	Family	Classification
1	1	e8cmo101	1:85-224	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
2	2	e8cmo201	2:161-183	5077.1.1.0	5077 → 5077.1 → 5077.1.1
3	3	e8cmo301	3:56-231	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
4	4	e8cmo401	4:135-262	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
5	5	e8cmo501	5:78-256	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
6	6	e8cmo601	6:116-254	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
7	7	e8cmo701	7:25-244	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
8	8	e8cmo801	8:27-240	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
9	9	e8cmo901	9:57-204	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
10	A	e8cmoA01	A:11-435	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
11	A	e8cmoA02	A:436-750	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
12	B	e8cmoB01	B:2-417	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
13	B	e8cmoB02	B:418-728	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
14	C	e8cmoC01	C:2-81	Fer4+Fer4_7	205 → 205.1 → 205.1.1
15	D	e8cmoD01	D:103-194	PsaD	834 → 834.1 → 834.1.1
16	E	e8cmoE01	E:35-95	PSI_PsaE	4 → 4.1 → 4.1.1
17	F	e8cmoF01	F:63-227	PSI_PsaF	5019 → 5019.1 → 5019.1.1
18	G	e8cmoG01	G:31-62	5063.1.1.0	5063 → 5063.1 → 5063.1.1
19	I	e8cmoI01	I:63-103	PSI_8	5020 → 5020.1 → 5020.1.1
20	J	e8cmoJ01	J:1-40	PSI_PsaJ	5021 → 5021.1 → 5021.1.1
21	K	e8cmoK01	K:69-113	PSI_PSAK	5063 → 5063.1 → 5063.1.1
22	L	e8cmoL01	L:54-189	PsaL	5064 → 5064.1 → 5064.1.1
23	Z	e8cmoZ1	Z:55-194	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors