ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ydrB1 - ECOD Domain | ECOD

ECOD/Domains/e5ydrB1

e5ydrB1

UID: 002162910

PDB

Range: B:350-501
PDB: 5YDR chain B(all domains)
UniProt: P26358 (all domains)
Gene: DNMT1

Molecule: DNA (cytosine-5)-methyltransferase 1

3D Structure

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Related Domains

Browse other domains in DNMT1-RFD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupReplication foci-targeting sequence N-terminal domain(3497)

HH-groupReplication foci-targeting sequence N-terminal domain(3497.1)

TT-groupReplication foci-targeting sequence N-terminal domain(3497.1.1)

FFamilyDNMT1-RFD(3497.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF12047DNMT1-RFD

Cytosine specific DNA methyltransferase replication foci domain

External Links

ECOD PDB View: 5YDR RCSB PDB: 5YDR PDBe: 5YDR UniProt: P26358

Downloads

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