ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2gjaB1 - ECOD Domain | ECOD

ECOD/Domains/e2gjaB1

e2gjaB1

UID: 000101642

PDB

Range: B:216-375
PDB: 2GJA chain B(all domains)
UniProt: P25522 (all domains)
Gene: mnmE

Molecule: tRNA modification GTPase trmE

3D Structure

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Related Domains

Browse other domains in MMR_HSR1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMMR_HSR1(2004.1.1.73)

Ligands

in contact, ≤ 4 Å

Tetrafluoroaluminate IonALF
drugDrugBank DB04444
Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315

Pfam Families

PF01926MMR_HSR1

50S ribosome-binding GTPase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2GJA RCSB PDB: 2GJA PDBe: 2GJA UniProt: P25522

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ion

metal

+ 1 additive (Ammonium ion)

Ammonium ionNH4

Shown in the structure viewer. Drug annotations from DrugDomain.