ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4blvA1 - ECOD Domain | ECOD

ECOD/Domains/e4blvA1

e4blvA1

UID: 001094863

PDB

Range: A:1-280
PDB: 4BLV chain A(all domains)
UniProt: P37634 (all domains)
Gene: rlmJ

Molecule: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J

3D Structure

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Related Domains

Browse other domains in RsmJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyRsmJ(2003.1.5.37)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 4 additives (Glycerin, Sulfate ion, 1,2-ETHANEDIOL, …)

GlycerinGOL
DrugBank DB09462

Pfam Families

Ribosomal RNA large subunit methyltransferase D, RlmJ

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4BLV RCSB PDB: 4BLV PDBe: 4BLV UniProt: P37634

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.