ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4bluB1 - ECOD Domain | ECOD

ECOD/Domains/e4bluB1

e4bluB1

UID: 001096421

PDB

Range: B:2-280
PDB: 4BLU chain B(all domains)
UniProt: P37634 (all domains)
Gene: rlmJ

Molecule: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J

3D Structure

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Related Domains

Browse other domains in RsmJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyRsmJ(2003.1.5.37)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 5 additives (Glycerin, Sulfate ion, Tromethamine, …)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
Tromethamine

Pfam Families

Ribosomal RNA large subunit methyltransferase D, RlmJ

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4BLU RCSB PDB: 4BLU PDBe: 4BLU UniProt: P37634

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.