ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4injA4 - ECOD Domain | ECOD

ECOD/Domains/e4injA4

e4injA4

UID: 001258574

PDB

Range: A:155-324
PDB: 4INJ chain A(all domains)
UniProt: Q8Y6P6 (all domains)
Gene: lmo1638

Molecule: Lmo1638 protein

3D Structure

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Related Domains

Browse other domains in Peptidase_S66C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThe "swivelling" beta/beta/alpha domains(2487)

HH-groupThe "swivelling" beta/beta/alpha domain(2487.1)

TT-groupThe "swivelling" beta/beta/alpha domain(2487.1.1)

FFamilyPeptidase_S66C(2487.1.1.18)

Ligands

in contact, ≤ 4 Å

[(2r,3s,4r,5r)-5-(6-Amino-9h-Purin-9-Yl)-3,4-Dihydroxytetrahydro-2-Furanyl]Methyl SulfamateLMS
drugDrugBank DB02916
Magnesium ionMG
metalwithin 5 Å only

Pfam Families

PF17676Peptidase_S66C

LD-carboxypeptidase C-terminal domain

ClanCL0364Leu-IlvD

External Links

ECOD PDB View: 4INJ RCSB PDB: 4INJ PDBe: 4INJ UniProt: Q8Y6P6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.