ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pv1A1 - ECOD Domain | ECOD

ECOD/Domains/e4pv1A1

e4pv1A1

UID: 001323674

PDB

Range: A:3-215
PDB: 4PV1 chain A(all domains)
UniProt: P83791 (all domains)
Gene: petB

Molecule: Cytochrome b6

3D Structure

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Related Domains

Browse other domains in Cytochrome_B →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupTransmembrane di-heme cytochromes(5069.1.1)

FFamilyCytochrome_B(5069.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Undecyl-Beta-D-Maltopyranoside

Pfam Families

PF00033Cytochrome_B

Cytochrome b/b6/petB

ClanCL03282heme_cytochrom

External Links

ECOD PDB View: 4PV1 RCSB PDB: 4PV1 PDBe: 4PV1 UniProt: P83791

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02686

Ferroheme CHEC

drugDrugBank DB03317within 5 Å only

(1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate7PH

Octadecane8K6

Cadmium ionCD

metal

PentadecaneMYS

(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDEOPC

Stigmatellin aSMA

Shown in the structure viewer. Drug annotations from DrugDomain.