ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4aukA3 - ECOD Domain | ECOD

ECOD/Domains/e4aukA3

e4aukA3

UID: 001345010

PDB

Range: A:74-177
PDB: 4AUK chain A(all domains)
UniProt: P0ADR6 (all domains)
Gene: rlmM

Molecule: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M

3D Structure

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Related Domains

Browse other domains in RLMM_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTHUMP domain-like(4143)

HH-groupTHUMP domain-like(4143.1)

TT-groupTHUMP domain-like(4143.1.1)

FFamilyRLMM_N(4143.1.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Sulfate ion, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

Ribosomal RNA large subunit methyltransferase M, N-terminal

ClanCL0747THUMP

External Links

ECOD PDB View: 4AUK RCSB PDB: 4AUK PDBe: 4AUK UniProt: P0ADR6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.