ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fmbB1 - ECOD Domain | ECOD

ECOD/Domains/e4fmbB1

e4fmbB1

UID: 000152413

PDB

Range: B:6-176
PDB: 4FMB chain B(all domains)
UniProt: P62820 (all domains)
Gene: RAB1A

Molecule: Ras-related protein Rab-1A

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Aluminum fluorideAF3
Magnesium ionMG

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4FMB RCSB PDB: 4FMB PDBe: 4FMB UniProt: P62820

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.