ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4nxoB1 - ECOD Domain | ECOD

ECOD/Domains/e4nxoB1

e4nxoB1

UID: 001691975

PDB

Range: B:287-527
PDB: 4NXO chain B(all domains)
UniProt: P14735 (all domains)
Gene: IDE

Molecule: Insulin-degrading enzyme

3D Structure

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Related Domains

Browse other domains in Peptidase_M16_C,Peptidase_M16_M →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPeptidase_M16_C,Peptidase_M16_M(309.1.1.6)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (1,4-Dioxane, Pentaethylene glycol, 1,2-ETHANEDIOL, …)

1,4-DioxaneDIO
DrugBank DB03316
Pentaethylene glycol1PE
1,2-ETHANEDIOLEDO

Pfam Families

PF05193Peptidase_M16_C

Peptidase M16 inactive domain

ClanCL0094Peptidase_ME

PF16187Peptidase_M16_M

Middle or third domain of peptidase_M16

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 4NXO RCSB PDB: 4NXO PDBe: 4NXO UniProt: P14735

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.