ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wf9J1 - ECOD Domain | ECOD

ECOD/Domains/e4wf9J1

e4wf9J1

UID: 001695042

PDB

Range: J:1-141
PDB: 4WF9 chain J(all domains)
UniProt: Q2FW13 (all domains)
Gene: rplP

Molecule: 50S ribosomal protein L16

3D Structure

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Related Domains

Browse other domains in Ribosomal_L16 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupRibosomal protein L10e(325.1.5)

FFamilyRibosomal_L16(325.1.5.1)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566
Magnesium ionMG
metal
MANGANESE (II) IONMN

Pfam Families

PF00252Ribosomal_L16

Ribosomal protein L16p/L10e

ClanCL0021OB

External Links

ECOD PDB View: 4WF9 RCSB PDB: 4WF9 PDBe: 4WF9 UniProt: Q2FW13

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.