ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5f2vV1 - ECOD Domain | ECOD

ECOD/Domains/e5f2vV1

e5f2vV1

UID: 001719460

PDB

Range: V:3-197
PDB: 5F2V chain V(all domains)
UniProt: O31611 (all domains)
Gene: yjbM

Molecule: GTP pyrophosphokinase YjbM (EC 2.7.6.5) ((p)ppGpp synthase YjbM) (Small alarmone synthase 1) (SAS 1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in RelA_SpoT →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyRelA_SpoT(316.1.1.13)

Pfam Families

PF04607RelA_SpoT

Region found in RelA / SpoT proteins

ClanCL0260NTP_transf

External Links

ECOD PDB View: 5F2V RCSB PDB: 5F2V PDBe: 5F2V UniProt: O31611

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure