ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jvdB1 - ECOD Domain | ECOD

ECOD/Domains/e5jvdB1

e5jvdB1

UID: 001841639

PDB

Range: B:2-245
PDB: 5JVD chain B(all domains)
UniProt: Q6B856 (all domains)
Gene: TUBB2B

Molecule: Tubulin beta-2B chain

3D Structure

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Related Domains

Browse other domains in Tubulin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin(2003.1.6.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
(2E)-3-(3-hydroxy-4-methoxyphenyl)-1-(7-methoxy-2H-1,3-benzodioxol-5-yl)-2-methylprop-2-en-1-one6NL
Magnesium ion

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5JVD RCSB PDB: 5JVD PDBe: 5JVD UniProt: Q6B856

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Calcium ionCA

metalwithin 5 Å only

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Glycerol)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.