ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5j91DE1 - ECOD Domain | ECOD

ECOD/Domains/e5j91DE1

e5j91DE1

UID: 001860136

PDB

Range: DE:1-201
PDB: 5J91 chain DE(all domains)
UniProt: P60723 (all domains)
Gene: rplD

Molecule: 50S ribosomal protein L4

3D Structure

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Related Domains

Browse other domains in Ribosomal_L4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L4(7559)

HH-groupRibosomal protein L4(7559.1)

TT-groupRibosomal protein L4(7559.1.1)

FFamilyRibosomal_L4(7559.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, DI(HYDROXYETHYL)ETHER)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF00573Ribosomal_L4

Ribosomal protein L4/L1 family

External Links

ECOD PDB View: 5J91 RCSB PDB: 5J91 PDBe: 5J91 UniProt: P60723

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.