ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5it8DE1 - ECOD Domain | ECOD

ECOD/Domains/e5it8DE1

e5it8DE1

UID: 001868943

PDB

Range: DE:1-201
PDB: 5IT8 chain DE(all domains)
UniProt: P60723 (all domains)
Gene: rplD

Molecule: 50S ribosomal protein L4

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_L4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L4(7559)

HH-groupRibosomal protein L4(7559.1)

TT-groupRibosomal protein L4(7559.1.1)

FFamilyRibosomal_L4(7559.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, DI(HYDROXYETHYL)ETHER)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF00573Ribosomal_L4

Ribosomal protein L4/L1 family

External Links

ECOD PDB View: 5IT8 RCSB PDB: 5IT8 PDBe: 5IT8 UniProt: P60723

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.