ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yzzA1 - ECOD Domain | ECOD

ECOD/Domains/e4yzzA1

e4yzzA1

UID: 001881978

PDB

Range: A:31-155,A:250-366
PDB: 4YZZ chain A(all domains)
UniProt: A0A0H3LP08 (all domains)
Gene: BB0280

Molecule: TRAP TRANSPORTER SOLUTE BINDING PROTEIN

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

Picolinic acid6PC
drugDrugBank DB05483

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 4YZZ RCSB PDB: 4YZZ PDBe: 4YZZ UniProt: A0A0H3LP08

Downloads

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