ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l0hA1 - ECOD Domain | ECOD

ECOD/Domains/e5l0hA1

e5l0hA1

UID: 001884198

PDB

Range: A:960-1132
PDB: 5L0H chain A(all domains)
UniProt: P18206 (all domains)
Gene: VCL

Molecule: Vinculin

3D Structure

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Related Domains

Browse other domains in Vinculin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupalpha-catenin-related(601.1)

TT-groupalpha-catenin/vinculin(601.1.1)

FFamilyVinculin(601.1.1.1)

Ligands

in contact, ≤ 4 Å

[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoatePIO

+ 2 additives (Phosphate ion, DI(HYDROXYETHYL)ETHER)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

PF01044Vinculin

Vinculin family

ClanCL0705VBS-like

External Links

ECOD PDB View: 5L0H RCSB PDB: 5L0H PDBe: 5L0H UniProt: P18206

Downloads

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DI(HYDROXYETHYL)ETHER

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.