ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qv4D1 - ECOD Domain | ECOD

ECOD/Domains/e3qv4D1

e3qv4D1

UID: 001903249

PDB

Range: D:1-171
PDB: 3QV4 chain D(all domains)
UniProt: Q9GK12 (all domains)
Gene: PGLYRP1

Molecule: Peptidoglycan recognition protein 1

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160
D-Glutamic AcidDGL
drugDrugBank DB02517
meso-Tartaric acid

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 3QV4 RCSB PDB: 3QV4 PDBe: 3QV4 UniProt: Q9GK12

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB14756

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.