ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5lqwR1 - ECOD Domain | ECOD

ECOD/Domains/e5lqwR1

e5lqwR1

UID: 001927336

PDB

Range: R:47-272
PDB: 5LQW chain R(all domains)
UniProt: Q12309 (all domains)
Gene: CLF1

Molecule: Pre-mRNA-splicing factor CLF1 (Crooked neck-like factor 1) (PRP19-associated complex protein 77) (Synthetic lethal with CDC40 protein 3)

3D Structure

Loading viewer...

Related Domains

Browse other domains in HAT, HAT_Syf1_CNRKL1_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyHAT, HAT_Syf1_CNRKL1_N(109.4.1.1466)

Pfam Families

HAT (Half-A-TPR) repeat

ClanCL0020TPR

PF23233HAT_Syf1_CNRKL1_N

Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

ClanCL0020TPR

External Links

ECOD PDB View: 5LQW RCSB PDB: 5LQW PDBe: 5LQW UniProt: Q12309

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure