ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5mdnB5 - ECOD Domain | ECOD

ECOD/Domains/e5mdnB5

e5mdnB5

UID: 001933910

PDB

Range: B:468-522
PDB: 5MDN chain B(all domains)
UniProt: A3MV07 (all domains)
Gene: Pcal_1049

Molecule: DNA polymerase (EC 2.7.7.7)

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturealpha bundles(a.7)

XX-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970)

HH-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1)

TT-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1.1)

FFamilyDNA_pol_B(4970.1.1.1)

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 5MDN RCSB PDB: 5MDN PDBe: 5MDN UniProt: A3MV07

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure