ECODEvolutionary Classification of Protein Domains

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PDB 5MDN

X-RAY DIFFRACTION2.80 Å0 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

6 domains

e5mdnA1(A:622-766)e5mdnA2(A:157-368)e5mdnA3(A:468-522)e5mdnA4(A:369-467,A:523-621)e5mdnA5(A:1-38,A:114-129,A:154-156)e5mdnA6(A:39-113)

Chain Bview chain

6 domains

e5mdnB1(B:39-113)e5mdnB2(B:1-38,B:114-129,B:154-156)e5mdnB3(B:369-467,B:523-621)e5mdnB4(B:622-766)e5mdnB5(B:468-522)e5mdnB6(B:157-368)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5mdnA1	A:622-766	DNA_pol_B	4969 → 4969.1 → 4969.1.1
2	A	e5mdnA2	A:157-368	DNA_pol_B_exo1	2484 → 2484.1 → 2484.1.1
3	A	e5mdnA3	A:468-522	DNA_pol_B	4970 → 4970.1 → 4970.1.1
4	A	e5mdnA4	A:369-467,A:523-621	DNA_pol_B	304 → 304.48 → 304.48.1
5	A	e5mdnA5	A:1-38,A:114-129,A:154-156	2.1.1.0	2 → 2.1 → 2.1.1
6	A	e5mdnA6	A:39-113	304.114.1.0	304 → 304.114 → 304.114.1
7	B	e5mdnB1	B:39-113	304.114.1.0	304 → 304.114 → 304.114.1
8	B	e5mdnB2	B:1-38,B:114-129,B:154-156	2.1.1.0	2 → 2.1 → 2.1.1
9	B	e5mdnB3	B:369-467,B:523-621	DNA_pol_B	304 → 304.48 → 304.48.1
10	B	e5mdnB4	B:622-766	DNA_pol_B	4969 → 4969.1 → 4969.1.1
11	B	e5mdnB5	B:468-522	DNA_pol_B	4970 → 4970.1 → 4970.1.1
12	B	e5mdnB6	B:157-368	DNA_pol_B_exo1	2484 → 2484.1 → 2484.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors