ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v9hA1 - ECOD Domain | ECOD

ECOD/Domains/e5v9hA1

e5v9hA1

UID: 002061466

PDB

Range: A:260-622
PDB: 5V9H chain A(all domains)
UniProt: P07379 (all domains)
Gene: Pck1

Molecule: Phosphoenolpyruvate carboxykinase, cytosolic [GTP]

3D Structure

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Related Domains

Browse other domains in PEPCK_GTP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupPEP carboxykinase catalytic C-terminal domain(2004.1.2)

FFamilyPEPCK_GTP(2004.1.2.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
2-Phosphoglycolic AcidPGA
drugDrugBank DB02726

Pfam Families

PF00821PEPCK_GTP

Phosphoenolpyruvate carboxykinase C-terminal P-loop domain

ClanCL0374PEP-carboxyk

External Links

ECOD PDB View: 5V9H RCSB PDB: 5V9H PDBe: 5V9H UniProt: P07379

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

MANGANESE (II) ION

metal

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from DrugDomain.