ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5nljB1 - ECOD Domain | ECOD

ECOD/Domains/e5nljB1

e5nljB1

UID: 002067992

PDB

Range: B:1-71
PDB: 5NLJ chain B(all domains)
UniProt: P0CG47 (all domains)
Gene: UBB

Molecule: Polyubiquitin-B

3D Structure

Loading viewer...

Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

TrifluoroethanolETF
drugDrugBank DB03226
Zinc ionZN
metal

+ 2 additives (Acetate, DI(HYDROXYETHYL)ETHER)

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5NLJ RCSB PDB: 5NLJ PDBe: 5NLJ UniProt: P0CG47

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate

DrugBank DB14511

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.