ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nkmE1 - ECOD Domain | ECOD

ECOD/Domains/e5nkmE1

e5nkmE1

UID: 002074971

PDB

Range: E:333-355,E:380-419
PDB: 5NKM chain E(all domains)
UniProt: O62301 (all domains)
Gene: smg-8

Molecule: Nonsense-mediated mRNA decay factor SMG8 (Suppressor with morphogenetic effect on genitalia protein 8)

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621)

HH-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1)

TT-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1.1)

FFamilySmg8_Smg9(621.1.1.2)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

ECOD PDB View: 5NKM RCSB PDB: 5NKM PDBe: 5NKM UniProt: O62301

Downloads

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