ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nirA1 - ECOD Domain | ECOD

ECOD/Domains/e5nirA1

e5nirA1

UID: 002083002

PDB

Range: A:30-98
PDB: 5NIR chain A(all domains)
UniProt: P02458 (all domains)
Gene: COL2A1

Molecule: Collagen alpha-1(II) chain

3D Structure

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Related Domains

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Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupFibronectin type I module-like(391)

HH-groupFibronectin type I module-like(391.1)

TT-groupVWC domain-related(391.1.2)

FFamilyVWC(391.1.2.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Heptaethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, …)

Heptaethylene glycolP33
DrugBank DB03394
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

von Willebrand factor type C domain

ClanCL0451FnI-like

External Links

ECOD PDB View: 5NIR RCSB PDB: 5NIR PDBe: 5NIR UniProt: P02458

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.