ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vyuB1 - ECOD Domain | ECOD

ECOD/Domains/e5vyuB1

e5vyuB1

UID: 002088825

PDB

Range: B:2-245
PDB: 5VYU chain B(all domains)
UniProt: F8WJP6 (all domains)
Gene: wbkC

Molecule: Gdp-mannose 4,6-dehydratase / gdp-4-amino-4,6-dideoxy-d-mannose formyltransferase

3D Structure

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Related Domains

Browse other domains in Formyl_trans_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFormyltransferase(7571)

HH-groupFormyltransferase(7571.1)

TT-groupFormyltransferase(7571.1.1)

FFamilyFormyl_trans_N(7571.1.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
N-{4-[{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}(formyl)amino]benzoyl}-L-glutamic acid1YA

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00551Formyl_trans_N

Formyl transferase

External Links

ECOD PDB View: 5VYU RCSB PDB: 5VYU PDBe: 5VYU UniProt: F8WJP6

Downloads

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