ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5optd3 - ECOD Domain | ECOD

ECOD/Domains/e5optd3

e5optd3

UID: 002137346

PDB

Range: d:116-182
PDB: 5OPT chain d(all domains)
UniProt: Q4DIZ9 (all domains)
Gene: Tc00.1047053503833.40

Molecule: Small ribosomal subunit protein uS5 (40S ribosomal protein S2)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_S5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupdsRNA-binding domain-like(330.1)

TT-groupdsRNA-binding domain-like(330.1.1)

FFamilyRibosomal_S5(330.1.1.2)

Pfam Families

PF00333Ribosomal_S5

Ribosomal protein S5, N-terminal domain

ClanCL0196DSRM

External Links

ECOD PDB View: 5OPT RCSB PDB: 5OPT PDBe: 5OPT UniProt: Q4DIZ9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure