ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yzgI1 - ECOD Domain | ECOD

ECOD/Domains/e5yzgI1

e5yzgI1

UID: 002390490

PDB

Range: I:156-819
PDB: 5YZG chain I(all domains)
UniProt: Q9HCS7 (all domains)
Gene: XAB2

Molecule: Pre-mRNA-splicing factor SYF1 (Protein HCNP) (XPA-binding protein 2)

3D Structure

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Related Domains

Browse other domains in TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_PRP39_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_PRP39_N(109.4.1.1479)

Pfam Families

Tetratricopeptide repeat

ClanCL0020TPR

PF23220HAT_Syf1_M

Pre-mRNA-splicing factor SYF1 middle HAT repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

External Links

ECOD PDB View: 5YZG RCSB PDB: 5YZG PDBe: 5YZG UniProt: Q9HCS7

Downloads

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TPR