ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5z56A6 - ECOD Domain | ECOD

ECOD/Domains/e5z56A6

e5z56A6

UID: 002392441

PDB

Range: A:2067-2314
PDB: 5Z56 chain A(all domains)
UniProt: Q6P2Q9 (all domains)
Gene: PRPF8

Molecule: Pre-mRNA-processing-splicing factor 8 (220 kDa U5 snRNP-specific protein) (PRP8 homolog) (Splicing factor Prp8) (p220)

3D Structure

Loading viewer...

Related Domains

Browse other domains in JAB,PROCT →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyJAB,PROCT(2492.1.1.3)

Pfam Families

JAB1/Mov34/MPN/PAD-1 ubiquitin protease

ClanCL0366JAB

PROCT (NUC072) domain

External Links

ECOD PDB View: 5Z56 RCSB PDB: 5Z56 PDBe: 5Z56 UniProt: Q6P2Q9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure